Blogging

There are many science blogs out there. So why is mine justified? I'm not sure it entirely is, but it has been a fun and useful outlet to 1) keep me writing, 2) express my unique point of view, 3) update colleagues, friends, family and whoever else finds their way to this site on my scientific life, 4) provided some search committees with additional insight into who I am, and 5) forced me to get outside of my daily myopia.

Sushi Science and other bloggers have argued that more scientists need to blog - for their own benefit and the benefit of those who pay us, the taxpayers. That educating just 3 people more about science is worth the time. With now over 1,000 visitors (sometime in May) since inception a year and a half ago, I have hopefully sparked at least a couple of people to think about science, science careers, or life in a slightly different way. My meager 1000 pales in comparison to other blog sites with tens of thousands of visitors, but I'm okay with that. Thank you to you 1000 that have graced my blog with your time.

I'm getting ready for new journeys now. First to the US Agency for International Development, where science will be thrown into a whole new context. And then as a new faculty member. The battle for a scientific home is coming to an end and now I need to start thinking about the furnishings, landscaping, and scientific kids.

Diversity: Message in a Rose-Colored Bottle

A recent ScienceCareers article on the benefits for women in science caught my attention. Of course, it was by a marine scientist... but that's not why it intrigued me. Maybe step one for retaining women in science and academia is to send the right message -- Science CAN be good for women who want it all (aka family and career). So often the message is that its too hard or impossible.

from FemaleScienceProfessor
Its interesting that the man is the one
trying to balance a tenure clock and
family. If more of these 'female' issues
became male AND female issues, I believe
more progress could be made and faster.

I think I was lucky enough to get the 'right' message early.  I had many extraordinary female role models as mentors... actually almost all of my mentors have been female.  Each has chosen their own path - no kids, single mom, delayed kids, etc. None of them took my path to have kids early, but I think the diversity of paths gave me confidence that there were multiple ways to 'make it work'.

Tracy Ainsworth writes in her ScienceCareer article that "there is no best time for a scientist to have kids" ... "I have found that the inverse is also true: There is no worst time, either." I agree completely.  And I believe those words have actually come out of my mouth a couple of times - for our first kid and when we bought a house. Life doesn't go and shouldn't go on hold while you write your award winning paper, do the critical experiment, or wait for the security of a 'permanent job'. I took the leap (with my wonderful spouse) and found ways to make it work. And I'm happy to say that I have two adorable (and annoying) kids and a house in the suburbs of DC. The only things missing from the quintessential American Dream picture is the white picket fence and dog. (I have a policy of only dealing with one source of poo that I have to clean up.) We're not rich but we're happy.

It was a bit shocking to me that some students I've meet over the course of my interviews were amazed that this was even possible. It is possible. 

Climate optimist or pessimist?

I love questions after a talk. It gives me a sense of whether I got my points across and how engaged the audience was during the talk. However, a question from the audience after a recent seminar caught me a bit off guard - "So, you sound like an optimist when it comes to climate change. Why?"

photo by @jot_au

In many ways, I'm an optimist in life -- with all the ups and downs in science, I'd be depressed and probably give up otherwise -- but when it comes to the outcomes of climate change, I'd like to think I'm objective. I believe its pretty clear that there will be winners and losers. Some of the losers will likely go extinct. My bigger concern is understanding who the winners and losers will be, WHY, and what effects will that have on ecosystem function.

Obviously, we can't do experiments on every species in the world, so understanding WHY (the mechanism for persistence or frailty) is essential for predicting the fate of others. I focus on plasticity during development as a way for species to rapidly (within an individual's lifetime... often within days) respond to environmental change. I chose this because it is intimately tied to dispersal and I think it gets far less attention than other mechanisms such as range expansion, change in reproductive timing, and behavior, but could be equally important. Unfortunately for the purple sea urchin, it appears that its changes in development in response to food will NOT help it adapt to climate driven mismatches between when food is available and when larvae in the water column (Adams et al 2011, Nature Communications). 

All of the mechanisms mentioned above, with the exception of range expansion, rely on plasticity (alteration of form, function, or behavior) in one way or another. Range expansion could simply be due to increased survival at the range limits as temperatures become more optimal or tolerable for a given species.

AP Photo/Butterfly Conservation, Keith Warmington

New findings published today in Science show that range expansion can also be facilitated by plasticity. The brown argus butterfly in the UK has rapidly expanded its range to the north not just because temperatures warmed. Key to the expansion was utilizing another host plant - plasticity. During cool periods, the new host plant was not as well suited and resulted in higher caterpillar mortality. However, warmer temperatures have now made this plant a better host, boosting population growth and expanding the butterfly's range.

Many animals have these sorts of complex interactions with other species - predator-prey, parasite-host, symbiosis, etc - that can either hinder or propel response to climate change. Taking an opposing scenario for the argus butterfly - if there hadn't been an additional host plant, the butterfly's range would be confined to the spread of the range of the single host plant, even though the butterfly alone could physically tolerate more northern habitat. And for the more pessimistic view, although the butterfly's range is expanding rapidly to the north, it does not appear to be keeping up with habitat loss in the south. So this butterfly may be a "Global Change Winner" in the UK, it may be a loser overall.

Still, the story highlights the need to include multiple species interactions in our mind when considering climate change. Temperature and pH (ocean acidification) tolerances alone are not sufficient.

Its a complex story. The only thing I'm clear about is that there will be change.

14 hours in the Hole

Yesterday was a whirlwind trip to Massachusetts for a meeting to discuss preparing a proposal.  The trip was surreal in many ways - talking about a proposal when I don't have an institution to submit a proposal through; giving a colleague and former mentor a congratulatory hug on receiving tenure that day; and having coffee at Coffee O while discussing upcoming cruises. A page out of the past and future.

Job Search: Two down

More decisions had to be made and I now know where I'll be for 2013. Yeah. I've accepted an AAAS Science and Technology Policy Fellowship to work with the US Agency for International Development (USAID) on their Biodiversity and Forestry Team. I'll be working with international development teams around the world to incorporate biodiversity conservation within their programmatic efforts. USAID recognizes that preserving biodiversity will maintain essential ecosystem services that people around the world depend on for food, water, transport, and income. These biodiversity initiatives, training and global programs will be essential to achieve sustainable international development. For me, I hope this fellowship will allow me to directly apply my marine background to real world problems in a meaningful way. I hope to gain new perspectives on how science can affect people's lives around the world. At the same time, I hope to expand to contribute to new related areas, such as food security, where biodiversity is often underappreciated.

This doesn't mean that I've given up on a faculty position. Being a professor has been my professional goal since I was in grade school (to be precise, 7th grade when I first learned about hydrothermal vents). I still have applications pending at my top choice places. I've gotten the go ahead from them to accept the fellowship. It is a one year gig. Deferring an academic job offer for a year is not uncommon.  So in a perfect world, I can have this unique experience to gain an important perspective on the broader impacts of science AND have my dream faculty position waiting for me at the end of the year. I can only hope to be so lucky.

Feb 3rd Science - Part II

Long overdue.... I know.

Nuclearized β- catenin (yellow/orange) in the 

vegetal pole of a sea urchin embryo, indicative 

of active cWnt signaling. (c) McClay, Duke.

Much of my work right now involves understanding how the environment can alter development and the resulting ecological consequences for larvae. This sort of developmental plasticity could be advantageous to rapidly responding to changing environments. However, it is important that much (really most) of developmental processes are insulated from environmental signals. This is especially true early in development when the basic cell types and overall patterning are specified. It wouldn't be advantageous for your future muscle cells to become gut, for example. So understanding when and why developmental programs are either receptive to environmental signals or refractory to (insulated from) them is essential to understanding how developmental defects arise and for current research trying to artificially mimic development in a dish.

Sethi et al, Science 2012 show a beautiful example of how two of the three basic cell types in most animals - endoderm (gives rise to the gut) and mesoderm (gives rise to muscles and other cell types) - are segregated from a common 'endomesoderm' state and become refractory to external signals. This segregation is NOT a single event but is a process and progression.

A cell-to-cell signaling event initiates the process. The localized nature of the signaling event is important because it allows only the future mesoderm to receive the initial signal.

As signals often do, this alters gene expression. So often we focus on what is turned on, but here, what is essential is what is turned off. By turning off a key early endomesoderm-state transcription factor in the future mesoderm, the resulting cascade of gene regulatory interactions allows the mesoderm-specific program to run and turns off another signal (a cWnt, see image) in the mesoderm. This carves out a new mesoderm territory.

Notch signaling suppression in mesoderm.

Endoderm's reinforcing loop. (c) Science

                                                                                                                            In the endoderm, the endomesoderm-state transcription factors continue to be expressed and drive the expresssion of the cWnt signaling molecule. The endoderm factors form a reinforcing loop with cWnt signaling driving transcription factors and those factors driving cWnt expression. Thus, by turning off gene expression in one territory but not in another one, two new states are created.

We're not done yet. If cWnt signaling is inappropriately received by the mesoderm, it will initiate the expression of endoderm genes. In order to prevent this, the initial cell-to-cell signal turns on a protein that can eliminate active cWnt signaling in the mesoderm by sequestering an essential co-factor. Now, the two states are insulated from one another.

Cell-fate specification, and development in general, is not just about turning things on. What gets turned off and prevented from being turned on (through insulation from 'outside' signaling) are just as important.

So for my purposes, I'm left wondering why and how some processes are left open to external signals. When is development robust and when is it plastic? Are there ways gene are connected (business jargon: gene regulatory network architectures) that make the process more robust? -- Sethi et al show reinforcing loops and insulation from signaling as possible mechanisms. Are there ways genes are connected that make the process more plastic? -- like in organ development with multiple, dynamic signaling inputs between multiple cell types? ... We're working on it...

Sethi, A.J., R.M. Wikramanayake, R.C. Angerer, R.C. Range, and L.M. Angerer. 2012. Sequential signaling crosstalk regulates endomesoderm segregation in sea urchin embryos. Science. v335:590-593. DOI: 10.1126/science.1212867 
(Images of gene regulatory networks from Sethi et al 2012, Science).

Job Search: One down

The first set of decisions has come down the pipe and I ended up turning down a tenure-track position yesterday. I didn't expect to be in a position to do such a thing... the hyper-competitive job market, desire to move to a more permanent position, etc, etc. However, in the end the job offer wasn't something I could take and feel that I would be successful and happy.

In thinking about diversity and women dropping out during the postdoc stage, I thought mostly of not being able to compete given time spent at home rather than in the lab or of voluntarily dropping out because of the high work demands.

This negotiation posed another barrier. I kept thinking that this would be a fine offer if I was single. I wouldn't have to worry about my husband getting a job (not in academia... but still a job in his field) - the every popular two-body problem. Also, a lower salary wouldn't be as much of an issue without kids -- no daycare expenses, smaller house, no college savings plans, etc. And not having personnel support early on would be okay because I could work later hours to make up for it until a grant came in. But alas, I am not single without kids.

I have the apparently lofty goal of having a spouse, kids, AND a career. I've currently got all of them and I'd like to keep it that way.  We'll see if that ends up being possible or if I transition to program management, science policy or something else. During an interview, one of the students said that a professor once told him - "Spouse, kids, or career. Pick TWO." I just don't want to believe that that is the reality.  It doesn't need to be. I have some great mentors that have all three, so I know it can be done!

Job search: The end is nigh

I haven't posted too much about the specifics of my job search, due to my prudence. I don't want to speculate, offend, or entice.  But I can say that, after five months of interviews, the end is finally insight. I've only got one more interview left and decisions must be made in the very near future. The good news is that I have job prospects, so I won't be peddling my wares on the streets. Its a strange feeling though... having your future decided. I promise interview stories and conundrums once the light at the end of the tunnel is clearer.

Faculty of 1000 Biology

Faculty of 1000 Biology is a group of experts in biology and biomedicine that provide post-publication peer review. The effort should help scientists wade through the ever expanding literature in order to keep up to date on the best papers and important advances in our field(s).

Our 2010 PNAS paper, "Larvae from afar colonize deep-sea hydrothermal vents after a catastrophic eruption" was reviewed.

Figure 2 from Adams et al 2012.
Illustration by Jack Cook, WHOI.

I'm pleased that another one of my papers has just been reviewed. This one was more of a surprise. Often the papers that are reviewed are in the big name journals - Science, Nature, PNAS, Current Biology, etc. This makes sense, as they often contain the major advances. However, it wasn't my Science paper or even my Nature Communications paper. The most recent review is on a review of larval biology and dispersal at hydrothermal vents in Oceanography, by myself and two other exemplary early career female scientists, Shawn Arellano and Breea Govenar... now a Recommended read. Thanks!

Diversity: Where do they go?

This week I've been thinking a lot about diversity in marine sciences. Diversity can mean lots of different things... But by pretty much all metrics, marine sciences lacks diversity. The number of women in the faculty, tenured and tenure-track, is disparingly low. The number of under-represented minorities is even lower. At the graduate level, gender equity is much better while minorities are still woefully poorly represented.

The numbers suggest that there may be pipeline issues in preparing, captivating, and recruiting minorities into marine sciences. I think the hope is that it's preparation and exposure issues. The harder scenario would be a cultural barrier. Doctors and lawyers may be more highly valued professions... Clearly their pay checks suggest that they are more highly values by society as a whole. Assuming the best case scenario, K-12 and community outreach efforts and targeted recruiting have promise for improving diversity.

Women may have different issues. There are women in the pipeline. Graduate student numbers are up... Some sub disciplines lag behind a bit but women are entering the pathway to the professorate. Where are they going from there? A hypothesis that's gaining more attention and supporting data for the sciences is that the conflicting pull of work and family during the transition between being a graduate student and becoming a faculty member causes dropouts before entering the academy.

A totally biased sample of my graduate cohort friends, 5 of 9 female friends have had kids or are pregnant within five years since earning their PhDs. Of these outstanding women, one has become a high school teacher, two are in policy and management, three have tenure track positions, and three of us are in post doc positions. There is not a perfect agreement between those that dropped out or have tenure track positions and family status. But I can say from personal experience that it's hard. Productivity is undoubtably impacted. The question really is how will going against traditional practice of either no children or delaying having kids until after tenure impact our ability to compete for faculty positions and to obtain tenure. competition is fierce...

Things that could and have help me are policies and support that increases my ability to do work... So child are, not only day to day, but also when traveling for business. Easy and clear maternity leave policies helped me... There were no questions regarding the benefits, so I could plan accordingly. The ability to have a panel of parents an email away to answer any questions regarding parenting has been invaluable from finding child care andpicking a doctor to getting coupons to save all I can. Now to get the kids to sleep through the night so I'm rested enough to think clearly all day....